Attribute Structuring Improves LLM-Based Evaluation of Clinical Text Summaries
Zelalem Gero, Chandan Singh, Yiqing Xie, Sheng Zhang, Tristan Naumann, Jianfeng Gao, Hoifung Poon
NeurIPS 2024 | December 2024
Publications
Publications by Year
-
From Medprompt to o1: Exploration of Run-Time Strategies for Medical Challenge Problems and Beyond
Harsha Nori, Naoto Usuyama, Nicholas King, S. McKinney, Xavier Fernandes, Sheng Zhang, Eric Horvitz
November 2024
MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imaging
Noel Codella, Yu Gu, Shrey Jain, Ho Hin Lee, Asma Ben Abacha, Alberto Santamaria-Pang, Will Guyman, Natieek Sangani, Sheng Zhang, Hoifung Poon, Stephanie Hyland, Shruthi Bannur, Javier Alvarez-Valle, Xue Li, John Garett, Alan McMillan, Gaurav Rajguru, Madhu Maddi, Nilesh Vijayrania, Reehan Bhimai, Nick Mecklenburg, Rupal Jain, Daniel Holstein, Naveen Gaur, Vijay Aski, Jenq-Neng Hwang, Thomas Lin, Ivan Tarapov, Matthew P Lungren, Mu Wei
October 2024
MedFuzz: Exploring the Robustness of Large Language Models in Medical Question Answering
Robert Osazuwa Ness, Hayden Helm, Katie Matton, Sheng Zhang, Junaid Bajwa, Carey E. Priebe, Eric Horvitz
June 2024
A whole-slide foundation model for digital pathology from real-world data
Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu-Hsin Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, R. Weerasinghe, Bill Wright, Ari Robicsek, Brian Piening, Carlo Bifulco, Sheng Wang, Hoifung Poon
Nature | May 2024
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Hanwen Xu, Jaspreet Bagga, Rob Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Andrea Tupini, Yu Wang, Matt Mazzola, Swadheen Shukla, Lars Liden, Jianfeng Gao, Matthew P Lungren, Tristan Naumann, Sheng Wang, Hoifung Poon
January 2024
-
Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine
Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz
November 2023
BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys
Yu Gu, Jianwei Yang, Naoto Usuyama, Chunyuan Li, Sheng Zhang, Matthew P Lungren, Jianfeng Gao, Hoifung Poon
October 2023
UniversalNER: Targeted Distillation from Large Language Models for Open Named Entity Recognition
Wenxuan Zhou, Sheng Zhang, Yu Gu, Muhao Chen, Hoifung Poon
ICLR 2024 | September 2023
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology
Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon
August 2023
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events
Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon
July 2023
LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day
Chunyuan Li, Cliff Wong, Sheng Zhang, Naoto Usuyama, Haotian Liu, Jianwei Yang, Tristan Naumann, Hoifung Poon, Jianfeng Gao
June 2023
Continual Contrastive Finetuning Improves Low-Resource Relation Extraction
Wenxuan Zhou, Sheng Zhang, Tristan Naumann, Muhao Chen, Hoifung Poon
ACL 2023 | May 2023
Compositional Zero-Shot Domain Transfer with Text-to-Text Models
Fangyu Liu, Qianchu Liu, Shruthi Bannur, Fernando Pérez-García, Naoto Usuyama, Sheng Zhang, Tristan Naumann, Aditya Nori, Hoifung Poon, Javier Alvarez-Valle, Ozan Oktay, Stephanie Hyland
TACL 2023 | March 2023
Context-faithful Prompting for Large Language Models
Wenxuan Zhou, Sheng Zhang, Hoifung Poon, Muhao Chen
March 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
-
BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining
Renqian Luo, Liai Sun, Yingce Xia, Tao Qin, Sheng Zhang, Hoifung Poon, Tie-Yan Liu
Briefings in Bioinformatics | November 2022, Vol 23(6)
Knowledge-Rich Self-Supervision for Biomedical Entity Linking
Sheng Zhang, Hao Cheng, Shikhar Vashishth, Cliff Wong, Jinfeng Xiao, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon
EMNLP 2022 | May 2022
-
Modular Self-Supervision for Document-Level Relation Extraction
Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon
2021 Empirical Methods in Natural Language Processing | September 2021
Publications by Research Area
-
Attribute Structuring Improves LLM-Based Evaluation of Clinical Text Summaries
Zelalem Gero, Chandan Singh, Yiqing Xie, Sheng Zhang, Tristan Naumann, Jianfeng Gao, Hoifung Poon
NeurIPS 2024 | December 2024
From Medprompt to o1: Exploration of Run-Time Strategies for Medical Challenge Problems and Beyond
Harsha Nori, Naoto Usuyama, Nicholas King, S. McKinney, Xavier Fernandes, Sheng Zhang, Eric Horvitz
November 2024
MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imaging
Noel Codella, Yu Gu, Shrey Jain, Ho Hin Lee, Asma Ben Abacha, Alberto Santamaria-Pang, Will Guyman, Natieek Sangani, Sheng Zhang, Hoifung Poon, Stephanie Hyland, Shruthi Bannur, Javier Alvarez-Valle, Xue Li, John Garett, Alan McMillan, Gaurav Rajguru, Madhu Maddi, Nilesh Vijayrania, Reehan Bhimai, Nick Mecklenburg, Rupal Jain, Daniel Holstein, Naveen Gaur, Vijay Aski, Jenq-Neng Hwang, Thomas Lin, Ivan Tarapov, Matthew P Lungren, Mu Wei
October 2024
MedFuzz: Exploring the Robustness of Large Language Models in Medical Question Answering
Robert Osazuwa Ness, Hayden Helm, Katie Matton, Sheng Zhang, Junaid Bajwa, Carey E. Priebe, Eric Horvitz
June 2024
A whole-slide foundation model for digital pathology from real-world data
Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu-Hsin Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, R. Weerasinghe, Bill Wright, Ari Robicsek, Brian Piening, Carlo Bifulco, Sheng Wang, Hoifung Poon
Nature | May 2024
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine
Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz
November 2023
UniversalNER: Targeted Distillation from Large Language Models for Open Named Entity Recognition
Wenxuan Zhou, Sheng Zhang, Yu Gu, Muhao Chen, Hoifung Poon
ICLR 2024 | September 2023
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events
Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon
July 2023
LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day
Chunyuan Li, Cliff Wong, Sheng Zhang, Naoto Usuyama, Haotian Liu, Jianwei Yang, Tristan Naumann, Hoifung Poon, Jianfeng Gao
June 2023
Continual Contrastive Finetuning Improves Low-Resource Relation Extraction
Wenxuan Zhou, Sheng Zhang, Tristan Naumann, Muhao Chen, Hoifung Poon
ACL 2023 | May 2023
Compositional Zero-Shot Domain Transfer with Text-to-Text Models
Fangyu Liu, Qianchu Liu, Shruthi Bannur, Fernando Pérez-García, Naoto Usuyama, Sheng Zhang, Tristan Naumann, Aditya Nori, Hoifung Poon, Javier Alvarez-Valle, Ozan Oktay, Stephanie Hyland
TACL 2023 | March 2023
Context-faithful Prompting for Large Language Models
Wenxuan Zhou, Sheng Zhang, Hoifung Poon, Muhao Chen
March 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining
Renqian Luo, Liai Sun, Yingce Xia, Tao Qin, Sheng Zhang, Hoifung Poon, Tie-Yan Liu
Briefings in Bioinformatics | November 2022, Vol 23(6)
Knowledge-Rich Self-Supervision for Biomedical Entity Linking
Sheng Zhang, Hao Cheng, Shikhar Vashishth, Cliff Wong, Jinfeng Xiao, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon
EMNLP 2022 | May 2022
-
Attribute Structuring Improves LLM-Based Evaluation of Clinical Text Summaries
Zelalem Gero, Chandan Singh, Yiqing Xie, Sheng Zhang, Tristan Naumann, Jianfeng Gao, Hoifung Poon
NeurIPS 2024 | December 2024
From Medprompt to o1: Exploration of Run-Time Strategies for Medical Challenge Problems and Beyond
Harsha Nori, Naoto Usuyama, Nicholas King, S. McKinney, Xavier Fernandes, Sheng Zhang, Eric Horvitz
November 2024
MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imaging
Noel Codella, Yu Gu, Shrey Jain, Ho Hin Lee, Asma Ben Abacha, Alberto Santamaria-Pang, Will Guyman, Natieek Sangani, Sheng Zhang, Hoifung Poon, Stephanie Hyland, Shruthi Bannur, Javier Alvarez-Valle, Xue Li, John Garett, Alan McMillan, Gaurav Rajguru, Madhu Maddi, Nilesh Vijayrania, Reehan Bhimai, Nick Mecklenburg, Rupal Jain, Daniel Holstein, Naveen Gaur, Vijay Aski, Jenq-Neng Hwang, Thomas Lin, Ivan Tarapov, Matthew P Lungren, Mu Wei
October 2024
A whole-slide foundation model for digital pathology from real-world data
Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu-Hsin Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, R. Weerasinghe, Bill Wright, Ari Robicsek, Brian Piening, Carlo Bifulco, Sheng Wang, Hoifung Poon
Nature | May 2024
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine
Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz
November 2023
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology
Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon
August 2023
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events
Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon
July 2023
LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day
Chunyuan Li, Cliff Wong, Sheng Zhang, Naoto Usuyama, Haotian Liu, Jianwei Yang, Tristan Naumann, Hoifung Poon, Jianfeng Gao
June 2023
Compositional Zero-Shot Domain Transfer with Text-to-Text Models
Fangyu Liu, Qianchu Liu, Shruthi Bannur, Fernando Pérez-García, Naoto Usuyama, Sheng Zhang, Tristan Naumann, Aditya Nori, Hoifung Poon, Javier Alvarez-Valle, Ozan Oktay, Stephanie Hyland
TACL 2023 | March 2023
Context-faithful Prompting for Large Language Models
Wenxuan Zhou, Sheng Zhang, Hoifung Poon, Muhao Chen
March 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
Modular Self-Supervision for Document-Level Relation Extraction
Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon
2021 Empirical Methods in Natural Language Processing | September 2021
-
MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imaging
Noel Codella, Yu Gu, Shrey Jain, Ho Hin Lee, Asma Ben Abacha, Alberto Santamaria-Pang, Will Guyman, Natieek Sangani, Sheng Zhang, Hoifung Poon, Stephanie Hyland, Shruthi Bannur, Javier Alvarez-Valle, Xue Li, John Garett, Alan McMillan, Gaurav Rajguru, Madhu Maddi, Nilesh Vijayrania, Reehan Bhimai, Nick Mecklenburg, Rupal Jain, Daniel Holstein, Naveen Gaur, Vijay Aski, Jenq-Neng Hwang, Thomas Lin, Ivan Tarapov, Matthew P Lungren, Mu Wei
October 2024
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Hanwen Xu, Jaspreet Bagga, Rob Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Andrea Tupini, Yu Wang, Matt Mazzola, Swadheen Shukla, Lars Liden, Jianfeng Gao, Matthew P Lungren, Tristan Naumann, Sheng Wang, Hoifung Poon
January 2024
BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys
Yu Gu, Jianwei Yang, Naoto Usuyama, Chunyuan Li, Sheng Zhang, Matthew P Lungren, Jianfeng Gao, Hoifung Poon
October 2023
LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day
Chunyuan Li, Cliff Wong, Sheng Zhang, Naoto Usuyama, Haotian Liu, Jianwei Yang, Tristan Naumann, Hoifung Poon, Jianfeng Gao
June 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
-
UniversalNER: Targeted Distillation from Large Language Models for Open Named Entity Recognition
Wenxuan Zhou, Sheng Zhang, Yu Gu, Muhao Chen, Hoifung Poon
ICLR 2024 | September 2023
BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining
Renqian Luo, Liai Sun, Yingce Xia, Tao Qin, Sheng Zhang, Hoifung Poon, Tie-Yan Liu
Briefings in Bioinformatics | November 2022, Vol 23(6)
Knowledge-Rich Self-Supervision for Biomedical Entity Linking
Sheng Zhang, Hao Cheng, Shikhar Vashishth, Cliff Wong, Jinfeng Xiao, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon
EMNLP 2022 | May 2022
Modular Self-Supervision for Document-Level Relation Extraction
Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon
2021 Empirical Methods in Natural Language Processing | September 2021
Publications by Type
-
From Medprompt to o1: Exploration of Run-Time Strategies for Medical Challenge Problems and Beyond
Harsha Nori, Naoto Usuyama, Nicholas King, S. McKinney, Xavier Fernandes, Sheng Zhang, Eric Horvitz
November 2024
MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imaging
Noel Codella, Yu Gu, Shrey Jain, Ho Hin Lee, Asma Ben Abacha, Alberto Santamaria-Pang, Will Guyman, Natieek Sangani, Sheng Zhang, Hoifung Poon, Stephanie Hyland, Shruthi Bannur, Javier Alvarez-Valle, Xue Li, John Garett, Alan McMillan, Gaurav Rajguru, Madhu Maddi, Nilesh Vijayrania, Reehan Bhimai, Nick Mecklenburg, Rupal Jain, Daniel Holstein, Naveen Gaur, Vijay Aski, Jenq-Neng Hwang, Thomas Lin, Ivan Tarapov, Matthew P Lungren, Mu Wei
October 2024
MedFuzz: Exploring the Robustness of Large Language Models in Medical Question Answering
Robert Osazuwa Ness, Hayden Helm, Katie Matton, Sheng Zhang, Junaid Bajwa, Carey E. Priebe, Eric Horvitz
June 2024
Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine
Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz
November 2023
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology
Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon
August 2023
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events
Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon
July 2023
-
Attribute Structuring Improves LLM-Based Evaluation of Clinical Text Summaries
Zelalem Gero, Chandan Singh, Yiqing Xie, Sheng Zhang, Tristan Naumann, Jianfeng Gao, Hoifung Poon
NeurIPS 2024 | December 2024
UniversalNER: Targeted Distillation from Large Language Models for Open Named Entity Recognition
Wenxuan Zhou, Sheng Zhang, Yu Gu, Muhao Chen, Hoifung Poon
ICLR 2024 | September 2023
Continual Contrastive Finetuning Improves Low-Resource Relation Extraction
Wenxuan Zhou, Sheng Zhang, Tristan Naumann, Muhao Chen, Hoifung Poon
ACL 2023 | May 2023
Compositional Zero-Shot Domain Transfer with Text-to-Text Models
Fangyu Liu, Qianchu Liu, Shruthi Bannur, Fernando Pérez-García, Naoto Usuyama, Sheng Zhang, Tristan Naumann, Aditya Nori, Hoifung Poon, Javier Alvarez-Valle, Ozan Oktay, Stephanie Hyland
TACL 2023 | March 2023
Knowledge-Rich Self-Supervision for Biomedical Entity Linking
Sheng Zhang, Hao Cheng, Shikhar Vashishth, Cliff Wong, Jinfeng Xiao, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon
EMNLP 2022 | May 2022
Modular Self-Supervision for Document-Level Relation Extraction
Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon
2021 Empirical Methods in Natural Language Processing | September 2021
-
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Hanwen Xu, Jaspreet Bagga, Rob Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Andrea Tupini, Yu Wang, Matt Mazzola, Swadheen Shukla, Lars Liden, Jianfeng Gao, Matthew P Lungren, Tristan Naumann, Sheng Wang, Hoifung Poon
January 2024
BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys
Yu Gu, Jianwei Yang, Naoto Usuyama, Chunyuan Li, Sheng Zhang, Matthew P Lungren, Jianfeng Gao, Hoifung Poon
October 2023
LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day
Chunyuan Li, Cliff Wong, Sheng Zhang, Naoto Usuyama, Haotian Liu, Jianwei Yang, Tristan Naumann, Hoifung Poon, Jianfeng Gao
June 2023
Context-faithful Prompting for Large Language Models
Wenxuan Zhou, Sheng Zhang, Hoifung Poon, Muhao Chen
March 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
-
A whole-slide foundation model for digital pathology from real-world data
Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu-Hsin Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, R. Weerasinghe, Bill Wright, Ari Robicsek, Brian Piening, Carlo Bifulco, Sheng Wang, Hoifung Poon
Nature | May 2024
BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mining
Renqian Luo, Liai Sun, Yingce Xia, Tao Qin, Sheng Zhang, Hoifung Poon, Tie-Yan Liu
Briefings in Bioinformatics | November 2022, Vol 23(6)