From Medprompt to o1: Exploration of Run-Time Strategies for Medical Challenge Problems and Beyond
Harsha Nori, Naoto Usuyama, Nicholas King, S. McKinney, Xavier Fernandes, Sheng Zhang, Eric Horvitz
November 2024
Publications
Publications by Year
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BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once
Theodore Zhao, Yu Gu, Jianwei Yang, Naoto Usuyama, Ho Hin Lee, Tristan Naumann, Jianfeng Gao, Angela Crabtree, B. Piening, Carlo Bifulco, Mu-Hsin Wei, Hoifung Poon, Sheng Wang
June 2024
A whole-slide foundation model for digital pathology from real-world data
Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu-Hsin Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, R. Weerasinghe, Bill Wright, Ari Robicsek, Brian Piening, Carlo Bifulco, Sheng Wang, Hoifung Poon
Nature | May 2024
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Hanwen Xu, Jaspreet Bagga, Rob Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Andrea Tupini, Yu Wang, Matt Mazzola, Swadheen Shukla, Lars Liden, Jianfeng Gao, Matthew P Lungren, Tristan Naumann, Sheng Wang, Hoifung Poon
January 2024
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When an Image is Worth 1,024 x 1,024 Words: A Case Study in Computational Pathology
Wenhui Wang, Shuming Ma, Hanwen Xu, Naoto Usuyama, Jiayu Ding, Hoifung Poon, Furu Wei
December 2023
Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine
Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz
November 2023
Exploring the Boundaries of GPT-4 in Radiology
Qianchu Liu, Stephanie Hyland, Shruthi Bannur, Kenza Bouzid, Daniel Coelho de Castro, Maria Teodora Wetscherek, Robert Tinn, Harshita Sharma, Fernando Pérez-García, Anton Schwaighofer, Pranav Rajpurkar, Sameer Tajdin Khanna, Hoifung Poon, Naoto Usuyama, Anja Thieme, Aditya Nori, Matthew P Lungren, Ozan Oktay, Javier Alvarez-Valle
EMNLP 2023 | October 2023
BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys
Yu Gu, Jianwei Yang, Naoto Usuyama, Chunyuan Li, Sheng Zhang, Matthew P Lungren, Jianfeng Gao, Hoifung Poon
October 2023
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology
Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon
August 2023
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events
Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon
July 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
-
Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing
Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez-Valle, Hoifung Poon, Ozan Oktay
The European Conference on Computer Vision (ECCV) | October 2022
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Modular Self-Supervision for Document-Level Relation Extraction
Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon
2021 Empirical Methods in Natural Language Processing | September 2021
Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature
Yu Wang, Jinchao Li, Tristan Naumann, Chenyan Xiong, Hao Cheng, Rob Tinn, Cliff Wong, Naoto Usuyama, Rick Rogahn, Zhihong Shen, Yang Qin, Eric Horvitz, Paul Bennett, Jianfeng Gao, Hoifung Poon
KDD 2021 | August 2021
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Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing
Yu Gu, Robert Tinn, Hao Cheng, Michael Lucas, Naoto Usuyama, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon
August 2020
ePillID Dataset: A Low-Shot Fine-Grained Benchmark for Pill Identification
Naoto Usuyama, Natalia Larios Delgado, Amanda K. Hall, Jessica Lundin
CVPR 2020 | June 2020
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Fast and accurate medication identification
Natalia Larios Delgado, Naoto Usuyama, Amanda K. Hall, Rebecca J. Hazen, Max Ma, Siva Sahu , Jessica Lundin
Nature Digital Medicine | February 2019
Publications by Research Area
-
From Medprompt to o1: Exploration of Run-Time Strategies for Medical Challenge Problems and Beyond
Harsha Nori, Naoto Usuyama, Nicholas King, S. McKinney, Xavier Fernandes, Sheng Zhang, Eric Horvitz
November 2024
A whole-slide foundation model for digital pathology from real-world data
Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu-Hsin Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, R. Weerasinghe, Bill Wright, Ari Robicsek, Brian Piening, Carlo Bifulco, Sheng Wang, Hoifung Poon
Nature | May 2024
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
When an Image is Worth 1,024 x 1,024 Words: A Case Study in Computational Pathology
Wenhui Wang, Shuming Ma, Hanwen Xu, Naoto Usuyama, Jiayu Ding, Hoifung Poon, Furu Wei
December 2023
Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine
Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz
November 2023
Exploring the Boundaries of GPT-4 in Radiology
Qianchu Liu, Stephanie Hyland, Shruthi Bannur, Kenza Bouzid, Daniel Coelho de Castro, Maria Teodora Wetscherek, Robert Tinn, Harshita Sharma, Fernando Pérez-García, Anton Schwaighofer, Pranav Rajpurkar, Sameer Tajdin Khanna, Hoifung Poon, Naoto Usuyama, Anja Thieme, Aditya Nori, Matthew P Lungren, Ozan Oktay, Javier Alvarez-Valle
EMNLP 2023 | October 2023
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events
Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon
July 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing
Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez-Valle, Hoifung Poon, Ozan Oktay
The European Conference on Computer Vision (ECCV) | October 2022
Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature
Yu Wang, Jinchao Li, Tristan Naumann, Chenyan Xiong, Hao Cheng, Rob Tinn, Cliff Wong, Naoto Usuyama, Rick Rogahn, Zhihong Shen, Yang Qin, Eric Horvitz, Paul Bennett, Jianfeng Gao, Hoifung Poon
KDD 2021 | August 2021
Fast and accurate medication identification
Natalia Larios Delgado, Naoto Usuyama, Amanda K. Hall, Rebecca J. Hazen, Max Ma, Siva Sahu , Jessica Lundin
Nature Digital Medicine | February 2019
-
From Medprompt to o1: Exploration of Run-Time Strategies for Medical Challenge Problems and Beyond
Harsha Nori, Naoto Usuyama, Nicholas King, S. McKinney, Xavier Fernandes, Sheng Zhang, Eric Horvitz
November 2024
A whole-slide foundation model for digital pathology from real-world data
Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu-Hsin Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, R. Weerasinghe, Bill Wright, Ari Robicsek, Brian Piening, Carlo Bifulco, Sheng Wang, Hoifung Poon
Nature | May 2024
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
When an Image is Worth 1,024 x 1,024 Words: A Case Study in Computational Pathology
Wenhui Wang, Shuming Ma, Hanwen Xu, Naoto Usuyama, Jiayu Ding, Hoifung Poon, Furu Wei
December 2023
Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine
Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz
November 2023
Exploring the Boundaries of GPT-4 in Radiology
Qianchu Liu, Stephanie Hyland, Shruthi Bannur, Kenza Bouzid, Daniel Coelho de Castro, Maria Teodora Wetscherek, Robert Tinn, Harshita Sharma, Fernando Pérez-García, Anton Schwaighofer, Pranav Rajpurkar, Sameer Tajdin Khanna, Hoifung Poon, Naoto Usuyama, Anja Thieme, Aditya Nori, Matthew P Lungren, Ozan Oktay, Javier Alvarez-Valle
EMNLP 2023 | October 2023
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology
Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon
August 2023
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events
Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon
July 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing
Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez-Valle, Hoifung Poon, Ozan Oktay
The European Conference on Computer Vision (ECCV) | October 2022
Modular Self-Supervision for Document-Level Relation Extraction
Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon
2021 Empirical Methods in Natural Language Processing | September 2021
Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature
Yu Wang, Jinchao Li, Tristan Naumann, Chenyan Xiong, Hao Cheng, Rob Tinn, Cliff Wong, Naoto Usuyama, Rick Rogahn, Zhihong Shen, Yang Qin, Eric Horvitz, Paul Bennett, Jianfeng Gao, Hoifung Poon
KDD 2021 | August 2021
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing
Yu Gu, Robert Tinn, Hao Cheng, Michael Lucas, Naoto Usuyama, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon
August 2020
Fast and accurate medication identification
Natalia Larios Delgado, Naoto Usuyama, Amanda K. Hall, Rebecca J. Hazen, Max Ma, Siva Sahu , Jessica Lundin
Nature Digital Medicine | February 2019
-
BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once
Theodore Zhao, Yu Gu, Jianwei Yang, Naoto Usuyama, Ho Hin Lee, Tristan Naumann, Jianfeng Gao, Angela Crabtree, B. Piening, Carlo Bifulco, Mu-Hsin Wei, Hoifung Poon, Sheng Wang
June 2024
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Hanwen Xu, Jaspreet Bagga, Rob Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Andrea Tupini, Yu Wang, Matt Mazzola, Swadheen Shukla, Lars Liden, Jianfeng Gao, Matthew P Lungren, Tristan Naumann, Sheng Wang, Hoifung Poon
January 2024
BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys
Yu Gu, Jianwei Yang, Naoto Usuyama, Chunyuan Li, Sheng Zhang, Matthew P Lungren, Jianfeng Gao, Hoifung Poon
October 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing
Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez-Valle, Hoifung Poon, Ozan Oktay
The European Conference on Computer Vision (ECCV) | October 2022
ePillID Dataset: A Low-Shot Fine-Grained Benchmark for Pill Identification
Naoto Usuyama, Natalia Larios Delgado, Amanda K. Hall, Jessica Lundin
CVPR 2020 | June 2020
-
Modular Self-Supervision for Document-Level Relation Extraction
Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon
2021 Empirical Methods in Natural Language Processing | September 2021
Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature
Yu Wang, Jinchao Li, Tristan Naumann, Chenyan Xiong, Hao Cheng, Rob Tinn, Cliff Wong, Naoto Usuyama, Rick Rogahn, Zhihong Shen, Yang Qin, Eric Horvitz, Paul Bennett, Jianfeng Gao, Hoifung Poon
KDD 2021 | August 2021
-
Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature
Yu Wang, Jinchao Li, Tristan Naumann, Chenyan Xiong, Hao Cheng, Rob Tinn, Cliff Wong, Naoto Usuyama, Rick Rogahn, Zhihong Shen, Yang Qin, Eric Horvitz, Paul Bennett, Jianfeng Gao, Hoifung Poon
KDD 2021 | August 2021
Publications by Type
-
From Medprompt to o1: Exploration of Run-Time Strategies for Medical Challenge Problems and Beyond
Harsha Nori, Naoto Usuyama, Nicholas King, S. McKinney, Xavier Fernandes, Sheng Zhang, Eric Horvitz
November 2024
BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once
Theodore Zhao, Yu Gu, Jianwei Yang, Naoto Usuyama, Ho Hin Lee, Tristan Naumann, Jianfeng Gao, Angela Crabtree, B. Piening, Carlo Bifulco, Mu-Hsin Wei, Hoifung Poon, Sheng Wang
June 2024
Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine
Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz
November 2023
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology
Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon
August 2023
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events
Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon
July 2023
-
Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation
Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama (naotous), Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu-Hsin Wei, Tristan Naumann, Muhao Chen, Matthew P Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon
March 2024
BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Hanwen Xu, Jaspreet Bagga, Rob Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Andrea Tupini, Yu Wang, Matt Mazzola, Swadheen Shukla, Lars Liden, Jianfeng Gao, Matthew P Lungren, Tristan Naumann, Sheng Wang, Hoifung Poon
January 2024
When an Image is Worth 1,024 x 1,024 Words: A Case Study in Computational Pathology
Wenhui Wang, Shuming Ma, Hanwen Xu, Naoto Usuyama, Jiayu Ding, Hoifung Poon, Furu Wei
December 2023
BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys
Yu Gu, Jianwei Yang, Naoto Usuyama, Chunyuan Li, Sheng Zhang, Matthew P Lungren, Jianfeng Gao, Hoifung Poon
October 2023
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing
Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P Lungren, Tristan Naumann, Hoifung Poon
March 2023
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing
Yu Gu, Robert Tinn, Hao Cheng, Michael Lucas, Naoto Usuyama, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon
August 2020
-
A whole-slide foundation model for digital pathology from real-world data
Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu-Hsin Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, R. Weerasinghe, Bill Wright, Ari Robicsek, Brian Piening, Carlo Bifulco, Sheng Wang, Hoifung Poon
Nature | May 2024
Fast and accurate medication identification
Natalia Larios Delgado, Naoto Usuyama, Amanda K. Hall, Rebecca J. Hazen, Max Ma, Siva Sahu , Jessica Lundin
Nature Digital Medicine | February 2019
-
Exploring the Boundaries of GPT-4 in Radiology
Qianchu Liu, Stephanie Hyland, Shruthi Bannur, Kenza Bouzid, Daniel Coelho de Castro, Maria Teodora Wetscherek, Robert Tinn, Harshita Sharma, Fernando Pérez-García, Anton Schwaighofer, Pranav Rajpurkar, Sameer Tajdin Khanna, Hoifung Poon, Naoto Usuyama, Anja Thieme, Aditya Nori, Matthew P Lungren, Ozan Oktay, Javier Alvarez-Valle
EMNLP 2023 | October 2023
Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing
Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez-Valle, Hoifung Poon, Ozan Oktay
The European Conference on Computer Vision (ECCV) | October 2022
Modular Self-Supervision for Document-Level Relation Extraction
Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon
2021 Empirical Methods in Natural Language Processing | September 2021
Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature
Yu Wang, Jinchao Li, Tristan Naumann, Chenyan Xiong, Hao Cheng, Rob Tinn, Cliff Wong, Naoto Usuyama, Rick Rogahn, Zhihong Shen, Yang Qin, Eric Horvitz, Paul Bennett, Jianfeng Gao, Hoifung Poon
KDD 2021 | August 2021
ePillID Dataset: A Low-Shot Fine-Grained Benchmark for Pill Identification
Naoto Usuyama, Natalia Larios Delgado, Amanda K. Hall, Jessica Lundin
CVPR 2020 | June 2020