GraphRAG auto-tuning provides rapid adaptation to new domains

GraphRAG uses large language models (LLMs) to create a comprehensive knowledge graph that details entities and their relationships from any collection of text documents. This graph enables GraphRAG to leverage the semantic structure of the data and generate responses to complex queries that require a broad understanding of the entire text. In previous blog posts, we introduced GraphRAG and demonstrated how it could be applied to news articles. In this blog post, we show that it can also be tuned to any domain to enhance the quality of the results.

The knowledge graph creation process is called indexing. An LLM, guided by a set of domain-specific prompts, reads all the source content and extracts the relevant information, including entities and relationships, which are then used to construct the graph. For example, when analyzing news articles, entities like people, places, and organizations are important. Here, relationship types might include “lives in,” “leads,” and “owns.” 

However, each domain has a different set of entity and relationship types. In the field of chemistry, for instance, entity types include molecules, enzymes, and reactions, while relationship types include “catalyzes” and “reduces.” Although our default news domain prompts in GraphRAG can produce a graph when applied to chemistry, they don’t capture the specific content a chemist would expect. 

Manually creating and tuning a set of domain-specific prompts is time-consuming. We know, as all the prompts used for news articles were generated manually. To streamline this process, we developed an automated tool that generates domain-specific prompts, which are tuned and ready to use. This tool follows a human-like approach; we provided an LLM with a sample of text data (e.g., 1% of 10,000 chemistry papers) and instructed it to produce the prompts it deemed most applicable to the content. Now, with these automatically generated and tuned prompts, we can immediately apply GraphRAG to a new domain of our choosing, confident that we’ll get high-quality results.

Indexing prompts in GraphRAG

During the indexing process, GraphRAG uses a set of prompts to instruct the LLM as it reads through the source content, extracting and organizing relevant information to construct the knowledge graph. Three of GraphRAG’s main indexing prompts include: 

1. Entity and relationship extraction: Identifies all the entities present and establishes relationships among them.
2. Entity and relationship summarization: Consolidates instances of entities and their relationships into a single, concise description. 
3. Community report generation: Generates a summary report for each community within the constructed knowledge graph. 

These prompts work best when tuned to the domain of the source content. In the rest of this blog post, we focus on domain tuning of the first prompt, “Entity and relationship extraction,” but similar methods apply to the second and third prompts. 

Below, Code Sample 1 shows the default few-shot prompt for entity and relationship extraction. This prompt was originally created for news articles and is the default form found in the GraphRAG GitHub repository (opens in new tab). The extraction prompt comprises four sections: 

• Extraction instructions: Provide the LLM with guidance on how to perform extraction. 
• Few-shot examples: Supply the LLM real examples of the types of entities and relationships worth extracting.
• Real data: Serves as a placeholder that is replaced by chunks of source content. 
• Gleanings: Encourage the LLM, over multiple turns, to extract additional information. 

The goal of auto-tuning is to create customized few-shot examples that are appropriate for the given domain. The default prompt, shown in Code Sample 1, provides the LLM with fifteen entity examples and twelve relationship examples, but it is notably restricted to just a few specific entity types: organization, geography, and person. These samples were invented by our team and do not represent real entities.

• Code Sample 1: Default prompt
  Goal
  Given a text document that is potentially relevant to this activity and a list of entity types, identify all entities of those types from the text and all relationships among the identified entities.
  
  Steps
  

  1. Identify all entities. For each identified entity, extract the following information:
  • entity_name: Name of the entity, capitalized
  • entity_type: One of the following types: [{entity_types}]
  • entity_description: Comprehensive description of the entity’s attributes and activities
  Format each entity as (“entity“, , , )
  
  
  2. From the entities identified in step 1, identify all pairs of (source_entity, target_entity) that are *clearly related* to each other.
  • source_entity: name of the source entity, as identified in step 1
  • target_entity: name of the target entity, as identified in step 1
  • relationship_description: explanation as to why you think the source entity and the target entity are related to each other
  • relationship_strength: a numeric score indicating strength of the relationship between the source entity and target entity
  Format each relationship as (“relationship“, , , , )
  
  
  3. Return output in English as a single list of all the entities and relationships identified in steps 1 and 2. Use {record_delimiter} as the list delimiter.
  
  
  4. When finished, output {completion_delimiter}

  ###################### Examples ######################
  
  Example 1:
  Entity_types: ORGANIZATION,PERSON
  Text:
  The Verdantis’s Central Institution is scheduled to meet on Monday and Thursday, with the institution planning to release its latest policy decision on Thursday at 1:30 p.m. PDT, followed by a press conference where Central Institution Chair Martin Smith will take questions. Investors expect the Market Strategy Committee to hold its benchmark interest rate steady in a range of 3.5%-3.75%.
  
  Output:
  (“entity”, CENTRAL INSTITUTION, ORGANIZATION, The Central Institution is the Federal Reserve of Verdantis, which is setting interest rates on Monday and Thursday)
  (“entity”, MARTIN SMITH, PERSON, Martin Smith is the chair of the Central Institution)
  (“entity”, MARKET STRATEGY COMMITTEE, ORGANIZATION, The Central Institution committee makes key decisions about interest rates and the growth of Verdantis’s money supply)
  
  (“relationship”, MARTIN SMITH – CENTRAL INSTITUTION, Martin Smith is the Chair of the Central Institution and will answer questions at a press conference, 9)
  
  Example 2:
  Entity_types: ORGANIZATION
  Text:
  TechGlobal’s (TG) stock skyrocketed in its opening day on the Global Exchange Thursday. But IPO experts warn that the semiconductor corporation’s debut on the public markets isn’t indicative of how other newly listed companies may perform.
  TechGlobal, a formerly public company, was taken private by Vision Holdings in 2014. The well-established chip designer says it powers 85% of premium smartphones.
  
  Output:
  (“entity”, TECHGLOBAL, ORGANIZATION, TechGlobal is a stock now listed on the Global Exchange which powers 85% of premium smartphones)
  (“entity”, VISION HOLDINGS, ORGANIZATION, Vision Holdings is a firm that previously owned TechGlobal)
  
  (“relationship”, TECHGLOBAL – VISION HOLDINGS, Vision Holdings formerly owned TechGlobal from 2014 until present, 5)
  
  Example 3:
  Entity_types: ORGANIZATION,GEO,PERSON
  Text:
  Five Aurelians jailed for 8 years in Firuzabad and widely regarded as hostages are on their way home to Aurelia.
  The swap orchestrated by Quintara was finalized when $8bn of Firuzi funds were transferred to financial institutions in Krohaara, the capital of Quintara.
  The exchange initiated in Firuzabad’s capital, Tiruzia, led to the four men and one woman, who are also Firuzi nationals, boarding a chartered flight to Krohaara.
  They were welcomed by senior Aurelian officials and are now on their way to Aurelia’s capital, Cashion.
  The Aurelians include 39-year-old businessman Samuel Namara, who has been held in Tiruzia’s Alhamia Prison, as well as journalist Durke Bataglani, 59, and environmentalist Meggie Tazbah, 53, who also holds Bratinas nationality.
  
  Output:
  (“entity”, FIRUZABAD, GEO, Firuzabad held Aurelians as hostages)
  (“entity”, AURELIA, GEO, Country seeking to release hostages)
  (“entity”, QUINTARA, GEO, Country that negotiated a swap of money in exchange for hostages)
  (“entity”, TIRUZIA, GEO, Capital of Firuzabad where the Aurelians were being held)
  (“entity”, KROHAARA, GEO, Capital city in Quintara)
  (“entity”, CASHION, GEO, Capital city in Aurelia)
  (“entity”, SAMUEL NAMARA, PERSON, Aurelian who spent time in Tiruzia’s Alhamia Prison)
  (“entity”, ALHAMIA PRISON, GEO, Prison in Tiruzia)
  (“entity”, DURKE BATAGLANI, PERSON, Aurelian journalist who was held hostage)
  (“entity”, MEGGIE TAZBAH, PERSON, Bratinas national and environmentalist who was held hostage)
  
  (“relationship”, FIRUZABAD – AURELIA, Firuzabad negotiated a hostage exchange with Aurelia, 2)
  (“relationship”, QUINTARA – AURELIA, Quintara brokered the hostage exchange between Firuzabad and Aurelia, 2)
  (“relationship”, QUINTARA – FIRUZABAD, Quintara brokered the hostage exchange between Firuzabad and Aurelia, 2)
  (“relationship”, SAMUEL NAMARA – ALHAMIA PRISON, Samuel Namara was a prisoner at Alhamia prison, 8)
  (“relationship”, SAMUEL NAMARA – MEGGIE TAZBAH, Samuel Namara and Meggie Tazbah were exchanged in the same hostage release, 2)
  (“relationship”, SAMUEL NAMARA – DURKE BATAGLANI, Samuel Namara and Durke Bataglani were exchanged in the same hostage release, 2)
  (“relationship”, MEGGIE TAZBAH – DURKE BATAGLANI, Meggie Tazbah and Durke Bataglani were exchanged in the same hostage release, 2)
  (“relationship”, SAMUEL NAMARA – FIRUZABAD, Samuel Namara was a hostage in Firuzabad, 2)
  (“relationship”, MEGGIE TAZBAH – FIRUZABAD, Meggie Tazbah was a hostage in Firuzabad, 2)
  (“relationship”, DURKE BATAGLANI – FIRUZABAD, Durke Bataglani was a hostage in Firuzabad, 2)
  
  ######################
  Real Data
  ######################
  
  Entity_types: {entity_types}
  Text: {input_text}
  
  Output:
  

Customization can be difficult and time-consuming—in both determining the right set of entities and relationships and in carefully constructing all the prompts for a specific domain. We address these challenges with auto-tuning.

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Auto-tuning architecture

Auto-tuning takes source content and produces an automatically generated set of domain-specific prompts. Figure 1 shows the architecture of the auto-tuning process for our three main indexing prompts.

We start by sending a sample of the source content to the LLM, which first identifies the domain and then creates an appropriate persona—used with downstream agents to tune the extraction process. Once the domain and persona are established, several processes occur in parallel to create our custom indexing prompts. This way, the few-shot prompts are generated based on the actual domain data and from the persona’s perspective. 

To illustrate how this works in practice for entity and relationship extraction, let’s shift to a new domain, the Behind the Tech podcast. 

Auto-tuning the Behind the Tech podcast 

Kevin Scott, CTO of Microsoft, hosts a podcast series called Behind the Tech where he interviews a wide variety of tech innovators. Given its focus on society and technology, this dataset would benefit from its own set of indexing prompts distinct from general news. While the default prompt works with podcast transcripts, we can achieve much higher precision with customized podcast-tuned prompts.

To demonstrate this, we use Code Sample 2, which contains a sample raw text input chunk from the podcast. 

Code Sample 2: Podcast data sample

The first step in adapting GraphRAG to the target domain is to generate a persona for the LLM to assume when generating examples for each prompt. As it adapts to the domain from the podcast text sample input, the LLM produces the following: 

Using the persona as part of the prompt, along with the text sample input, we allow the LLM to generate the entity and relationship-extraction prompt, including custom examples. Our indexing prompt is now automatically tuned to our new domain, as shown in Code Sample 3. 

• Code Sample 3: Auto-tuned prompt
  Goal
  Given a text document that is potentially relevant to this activity, first identify all entities needed from the text in order to capture the information and ideas in the text.
  Next, report all relationships among the identified entities.
  
  Steps
  

  1. Identify all entities. For each identified entity, extract the following information:
  • entity_name: Name of the entity, capitalized
  • entity_type: Suggest several labels or categories for the entity. The categories should not be specific, but should be as general as possible.
  • entity_description: Comprehensive description of the entity’s attributes and activities
  Format each entity as (““entity”“, , , )
  
  
  2. From the entities identified in step 1, identify all pairs of (source_entity, target_entity) that are *clearly related* to each other. For each pair of related entities, extract the following information:
  • source_entity: name of the source entity, as identified in step 1
  • target_entity: name of the target entity, as identified in step 1
  • relationship_description: explanation as to why you think the source entity and the target entity are related to each other
  • relationship_strength: a numeric score indicating strength of the relationship between the source entity and target entity
  Format each relationship as (““relationship”“, , , , )
  
  
  3. Return output in English as a single list of all the entities and relationships identified in steps 1 and 2. Use {record_delimiter} as the list delimiter.
  
  
  4. When finished, output

  Examples
  #############################
  
  Example 1:
  Text:
  CHRIS URMSON: Yeah, no, and it is, right? I think one of the things that people outside of Silicon Valley who haven’t been here don’t realize is that it’s not really. That, like, you know, people talk about Silicon Valley engineers being risk-takers. I think it’s actually the opposite. It’s the realization that if you go and try one of these things and you’re actually good at what you do, if it fails, it fails. You’ll have a job the next day at somewhere else, right? And you’ll have this wealth of experience that people will value. And I think that is something that it’s hard, you know, I’ll categorize this as you know east coast people but, you know, kind of more conventional business folks haven’t — don’t kind of have that sense of the opportunities that are around. And maybe we’ve just been here during a particularly
  
  Output:
  (“entity”, CHRIS URMSON, PERSON, Chris Urmson is a speaker discussing the culture and dynamics of Silicon Valley, particularly the attitude towards risk and failure)
  (“entity”, SILICON VALLEY, LOCATION, A region in California known for its technology industry and innovative environment, where engineers are perceived as risk-takers)
  (“entity”, SILICON VALLEY ENGINEERS, GROUP, Engineers working in Silicon Valley, characterized by a culture that values risk-taking and resilience in the face of failure)
  (“entity”, EAST COAST PEOPLE, GROUP, People from the East Coast of the United States, implied to have a more conventional and less risk-tolerant approach to business compared to those in Silicon Valley)
  
  (“relationship”, CHRIS URMSON – SILICON VALLEY, Chris Urmson discusses the culture and dynamics of Silicon Valley, emphasizing the local attitude towards risk and failure, 8)
  (“relationship”, SILICON VALLEY ENGINEERS – SILICON VALLEY, Silicon Valley Engineers are part of the Silicon Valley ecosystem, embodying the local culture of risk-taking and resilience, 9)
  (“relationship”, EAST COAST PEOPLE – SILICON VALLEY, East Coast People are contrasted with Silicon Valley individuals in terms of business culture and risk tolerance, 7)
  
  
  Example 2:
  Text:
  to ask Dr. Jemison that I think for her, and for me, space was this idea that really inspired us, I think, to go explore new frontiers. You know, it was this imagination of this thing that, you know, for me at least, like made me want to study computer science, because – like that was the most interesting terrestrial frontier I could go explore. And like you know, the thing that I wonder about is like what that frontier is, like what that inspiration will be for the next generation of scientists, and engineers and explorers. You know, like maybe it’s synthetic biology, but it’s going to be interesting to see whatever it is. [MUSIC] CHRISTINA WARREN: I couldn’t agree more. I look forward to watching and learning from all of that. All right, well, that’s a wrap. Thank you so much to Mae for joining us today. And to our listeners. Thank you for joining us and
  
  Output:
  (“entity”, SPACE, CONCEPT, Space is described as an inspiring concept that motivates exploration and study in new frontiers, particularly in science and technology)
  (“entity”, COMPUTER SCIENCE, FIELD, Computer science is highlighted as an interesting terrestrial frontier that the speaker was motivated to explore due to the inspiration from space)
  (“entity”, SYNTHETIC BIOLOGY, FIELD, Synthetic biology is mentioned as a potential inspiring frontier for the next generation of scientists, engineers, and explorers)
  (“entity”, CHRISTINA WARREN, PERSON, Christina Warren is the speaker who expresses agreement and looks forward to learning from the developments in new scientific frontiers)
  (“entity”, MAE, PERSON, Mae is mentioned as a guest who joined Christina Warren in the discussion about future scientific frontiers)
  
  (“relationship”, SPACE – COMPUTER SCIENCE, Space as a concept inspired the speaker to study computer science, 8)
  (“relationship”, CHRISTINA WARREN – MAE, Christina Warren thanks Mae for joining the discussion, 7)
  
  
  Example 3:
  Text:
  educational outcomes for kids. And if you look at the children of immigrants in East San Jose or East Palo Alto here in the Silicon Valley, like often, the parents are working two, three jobs. Like, they’re so busy that they have a hard time being engaged with their kids. And sometimes they don’t speak English. And so, like, they don’t even have the linguistic ability. And you can just imagine what a technology like this could do, where it really doesn’t care what language you speak. It can bridge that gap between the parents and the teacher, and it can be there to help the parent understand where the roadblocks are for the child and to even potentially get very personalized to the child’s needs and sort of help them on the things that they’re struggling with. I think it’s really, really very exciting. BILL GATES: Yeah, just the language barriers, we often forget about that. And that comes up in the developing world. India has
  
  Output:
  (“entity”, EAST SAN JOSE, GEO, A region in Silicon Valley where many immigrant families reside, and parents often work multiple jobs)
  (“entity”, EAST PALO ALTO, GEO, A region in Silicon Valley known for its significant immigrant population and economic challenges)
  (“entity”, SILICON VALLEY, GEO, A major hub for technology and innovation in California, USA)
  (“entity”, BILL GATES, PERSON, Prominent technology leader and philanthropist who discusses the impact of technology on overcoming language barriers)
  (“entity”, TECHNOLOGY, CONCEPT, Refers to new technological solutions that can assist in bridging language gaps between parents and teachers, and provide personalized support to children)
  
  (“relationship”, EAST SAN JOSE – SILICON VALLEY, East San Jose is a part of Silicon Valley, 9)
  (“relationship”, EAST PALO ALTO – SILICON VALLEY, East Palo Alto is located within Silicon Valley, 9)
  (“relationship”, TECHNOLOGY – BILL GATES, Bill Gates discusses the potential of technology to solve language barriers and educational challenges, 8)
  
  
  Real Data
  ######################
  
  Text: {input_text}
  
  Output:

Here, the automatically generated prompt using the sample content from Code Sample 2 identifies fourteen entity examples across six different entity types (person, location, group, concept, field, and geography) and eight relationship examples.

To assess how this impacts the extraction of the entire dataset, we used both the default and the auto-tuned prompt to generate the entity and relationship outputs. Before we explain the results, let’s review the default prompt’s outputs, which produced seven entities and six relationships, as shown in Code Sample 4. 

Code Sample 4: Default extraction output

Using the auto-tuned, domain-specific, automatically generated prompt, we achieved a deeper extraction, producing nine entities and eight relationships, as shown below in Code Sample 5. 

Code Sample 5: Auto-tuned extraction output

Compared with the default prompt, the auto-tuned prompt is an improvement, with more entities and more relationships, providing a more comprehensive view of our data. One key difference between this output and the output from the default prompt is the expansion in entity types being extracted. The default prompt is limited to three example types: organization, geography, and person. However, the auto-tuned prompt expands to more example types derived from the sample input text: organization, person, location, and music genre. 

Putting it all together 

We can observe a clear difference in the final outputs after using these auto-tuned prompts for indexing the podcast source data. To measure this difference, we compared the size of the resulting knowledge graphs using default with auto-tuned prompts. The following results were achieved while keeping all parameters constant between both runs and using GPT4-Turbo: 

As shown, the use of auto-tuning yields a significantly larger knowledge graph. For example, a prompt that looks for molecules will extract much more from a chemistry dataset than one that looks for people and places. More communities in the knowledge graph means that it can better serve global search queries. While the size of the knowledge graph can be a proxy for its utility, the true measure of utility is observed in end-to-end queries. To demonstrate this, we provide the following side-by-side comparison of a question using the default and auto-tuned prompts.

We asked GraphRAG the following question: “What’s the relationship between Ashley Llorens and Chicago?” 

First, we got the following results using the knowledge graph built with the default prompt. We then used the knowledge graph built with our auto-tuned prompt:

With auto-tuned indexing prompts, our knowledge graph became more representative of the dataset’s entities and relationships, enabling it to yield a valid response to the query. 

Advancing auto-tuning and expanding GraphRag’s capabilities

Looking ahead, we’re exploring other methods to build on this auto-tuning work. We’re excited to investigate new approaches for creating the core GraphRAG knowledge graph and are also studying ways to measure and evaluate the quality of these graph structures. Additionally, we’re researching methods to better assess performance so that we can identify the types of queries where GraphRAG provides unique value. This includes evaluating human-generated versus auto-tuned prompts, as well as exploring potential improvements to the auto-tuner. 

Overall, these new auto-tuner developments make GraphRAG much more accessible and turnkey. We hope this auto-tuning work removes many of the challenges involved when working with new datasets. We invite you to try out these capabilities yourself using GraphRAG’s core library (opens in new tab) and our Azure-based solution accelerator, available on GitHub (opens in new tab).